Garke on Substack: "I ran the sequence of that unknown ORF through some protein domain prediction algorithms. Here a pore is predicted from residues 80-133, and top GO terms are for ion channel, nucleotide/side binding, and catalytic activity: http://bioinf.cs.ucl.ac.uk/psipred/&uuid=3e2183c4-73a4…"

I ran the sequence of that unknown ORF through some protein domain prediction algorithms.

Here a pore is predicted from residues 80-133, and top GO terms are for ion channel, nucleotide/side binding, and catalytic activity:

Then FUpred predicts a 7-domain protein:

Those links should stay good for a couple days at least.

12:36 PM

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Oct 26, 2023